2007

Allen JO, Fauron CM, Minx P, Westgate L, Oddiraju S, Lin GN, Meyer L, Sun H, Kim K, Wang C, Du F, Xu D, Gibson M, Cifrese J, Clifton SW, and Newton KJ. 2007. Comparisons Among Two Fertile and Three Male-Sterile Mitochondrial Genomes of Maize. Genetics. Jul 29; [Epub ahead of print].

Birchler JA and Veitia RA. 2007. The gene balance hypothesis: from classical genetics to modern genomics. Plant Cell. 19(2):395-402.

Birchler JA, Yao H, and Chudalayandi S. 2007. Biological consequences of dosage dependent gene regulatory systems. Biochim Biophys Acta. 1769(5-6):422-8.

Brooks TD, Bushman BS, Williams WP, McMullen MD, and Buckley PM. 2007. Genetic Basis of Resistance to Fall Armyworm (Lepidoptera: Noctuidae) and Southwestern Corn Borer (Lepidoptera: Crambidae) Leaf-Feeding Damage in Maize. J Econ Entomol. 100:1470-1475.

Han F, Lamb JC, Yu W, Gao Z, and Birchler JA. 2007. Centromere function and nondisjunction are independent components of the maize B chromosome accumulation mechanism. Plant Cell. 19(2):524-33.

Hufford KM, Canaran P, Ware DH, McMullen MD, and Gaut BS. 2007. Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci. Plant Physiol.144(3):1642-53.

Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, and Rhee SY. 2007. The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiol. 143(2):587-99.

Lamb JC, Danilova T, Bauer MJ, Meyer JM, Holland JJ, Jensen MD, and Birchler JA. 2007. Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes. Genetics. 175(3):1047-58.

Lamb JC, Meyer JM, and Birchler JA. 2007. A hemicentric inversion in the maize line knobless Tama flint created two sites of centromeric elements and moved the kinetochore-forming region. Chromosoma 116(3):237-47.

Lamb JC, Meyer JM, Corcoran B, Kato A, Han F, and Birchler JA. 2007. Distinct chromosomal distributions of highly repetitive sequences in maize. Chromosome Res. 15(1):33-49.

Lamb JC, Riddle NC, Cheng YM, Theuri J, and Birchler JA. 2007. Localization and transcription of a retrotransposon-derived element on the maize B chromosome. Chromosome Res. 15(3):383-98.

Lamb JC, Yu W, Han F, and Birchler JA. 2007. Plant chromosomes from end to end: telomeres, heterochromatin and centromeres. Curr Opin Plant Biol. 10(2):116-22.

Lawrence CJ, Schaeffer ML, Seigfried TE, Campbell DA, Harper LC. 2007. MaizeGDB's new data types, resources and activities. Nucleic Acids Res. D895-900.

McGinnis K, Murphy N, Carlson AR, Akula A, Akula C, Basinger H, Carlson M, Hermanson P, Kovacevic N, McGill MA, Seshadri V, Yoyokie J, Cone K, Kaeppler HF, Kaeppler SM, and Springer NM. 2007. Assessing the efficiency of RNA interference for maize functional genomics. Plant Physiol. 143(4):1441-51.

Meyer JD, Snook ME, Houchins KE, Rector BG, Widstrom NW, and McMullen MD. 2007. Quantitative trait loci for maysin synthesis in maize (Zea mays L.) lines selected for high silk maysin content. Theor Appl Genet. 115:119-128.

Oyediran IO, Higdon ML, Clark TL, and Hibbard BE. 2007. Interactions of alternate hosts, post-emergence grass control, and rootworm-resistant transgenic corn on western corn rootworm (Coleoptera: Chrysomelidae) damage and adult emergence.  J. Econ Entomol. 100(2):557-65.

Poroyko V, Spollen WG, Hejlek LG, Hernandez AG, LeNoble ME, Davis G, Nguyen HT, Springer GK, Sharp RE, and Bohnert HJ. 2007. Comparing regional transcript profiles from maize primary roots under well-watered and low water potential conditions. J Exp Bot. 58(2):279-89.

Prischmann DA, Dashiell KE, Schneider DJ, and Hibbard BE. 2007. Field screening maize germplasm for resistance and tolerance to western corn rootworms (Col.: Chrysomelidae). J Appl Entomol. 131: 406-415.

Scott G, and Shyu CR. 2007. Knowledge-Driven Multidimensional Indexing Structure for Biomedical Media Database Retrieval, IEEE Transactions on Information Technology in BioMedicine 11:320-331.

Wei F, Coe E, Nelson W, Bharti AK, Engler F, Butler E, Kim H, Goicoechea JL, Chen M, Lee S, Fuks G, Sanchez-Villeda H, Schroeder S, Fang Z, McMullen M, Davis G, Bowers JE, Paterson AH, Schaeffer M, Gardiner J, Cone K, Messing J, Soderlund C, and Wing RA. 2007. Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History. PLoS Genet. 20;3(7).

Yamasaki M, Wright SI, and McMullen MD. 2007. Genomic Screening for Artificial Selection during Domestication and Improvement in Maize. Ann Bot (Lond). 2007 Aug 18; [Epub ahead of print].

Yim YS, Moak P, Sanchez-Villeda H, Musket TA, Close P, Klein PE, Mullet JE, McMullen MD, Fang Z, Schaeffer ML, Gardiner JM, Coe EH Jr, and Davis GL. 2007. A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps. BMC Genomics. 9;8:47.

Yu W, Han F, Gao Z, Vega JM, and Birchler JA. 2007. Construction and behavior of engineered minichromosomes in maize. Proc Natl Acad Sci. 22;104(21):8924-9.

Yu W, Lamb JC, Han F, and Birchler JA. 2007. Cytological visualization of DNA transposons and their transposition pattern in somatic cells of maize. Genetics. 175(1):31-9.

2006

Bauer MJ and Birchler JA. 2006. Organization of endoreduplicated chromosomes in the endosperm of Zea mays L. Chromosoma. 115(5):383-94.

Buckler ES, Gaut BS, and McMullen MD. 2006. Molecular and functional diversity of maize. Curr Opin Plant Biol. 9(2):172-176.

Chi PH, Shyu CR, and Xu D. 2006. A fast SCOP fold classification system using content-based E-Predict algorithm. BMC Bioinformatics. 7:362.

Coe EH, and Schaeffer ML. 2006. Uncaging mutants: moving from menageries to menages. Maydica 51:263-267.

Han F, Lamb JC, and Birchler JA. 2006. High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize. Proc Natl Acad Sci. 103(9):3238-3243.

Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, and Rhee SY. 2006. Plant Structure Ontology. Unified Vocabulary of Anatomy and Morphology of a Flowering Plant. Plant Physiol. 2006. Epub ahead of print.

Ivezic M, Tollefson JJ, Raspudic E, Brkic I, Brmez M, and Hibbard BE. 2006. Evaluation of corn hybrids for tolerance to corn rootworm (Diabrotica virgifera virgifera LeConte) larval feeding. Cereal Research Communications 34:1101-1107.

Kato A, and Birchler J. 2006.  Induction of tetraploid derivatives of maize inbred lines by nitrous oxide gas treatment. J Hered. 97(1):39-44.

Kato A, Albert PS, Vega JM, and Birchler JA. 2006. Sensitive fluorescence in situ hybridization signal detection in maize using directly labeled probes produced by high concentration DNA polymerase nick translation. Biotech Histochem. 81(2-3):71-8.

Kazic T. 2006. Putting semantics into the semantic web: how well can it capture biology? Pac Symp Biocomput. 140-51.

Lamb JC, and Birchler JA. 2006. Retroelement genome painting: cytological visualization of retroelement expansions in the genera Zea and Tripsacum. Genetics. 173(2):1007-21.

Morton BR, Bi IV, and McMullen MD, and Gaut BS. 2006. Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition. Genetics 172(1): 569-577.

Onstad DW, Hibbard BE, Clark TL, Crowder DW, and Carter KG. 2006. Analysis of density-dependent survival of Diabrotica (Coleoptera: Chrysomelidae) in cornfields.  Environ. Entomol. 35: 1272-1278.

Riddle NC, Kato A, and Birchler JA. 2006. Genetic variation for the response to ploidy change in Zea mays L. Theor Appl Genet. 114(1):101-11.

Valliyodan B, and Nguyen HT. 2006. Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Curr Opin Plant Biol. Apr;9(2):189-95.

Wilson TA, Clark TL, and Hibbard BE. 2006. Number of point sources of western corn rootworm (Coleoptera: Chrysomelidae) eggs in artificial infestations affects larval establishment and plant damage.  J. Kans. Entomol. Soc. 79: 119-128.

Yu J, Pressoir G, Briggs WH, Bi IV, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielson DM, Holland JB, Kresovich S, and Buckler ES. 2006. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38(2): 203-208.

Yu W, Lamb JC, Han F, and Birchler JA. 2006. Cytological visualization of DNA transposons and their transposition pattern in somatic cells of maize. Genetics. Epub ahead of print.

Yu W, Lamb JC, Han F, and Birchler JA. 2006. Telomere-mediated chromosomal truncation in maize. Proc Natl Acad Sci. 103(46):17331-6.

Yu W, Han F, Kato A, and Birchler JA. 2006. Characterization of a maize isochromosome 8S*8S. Genome. 49(6):700-6.

Zhao W, Canaran P, Jurkuta R, Fulton T, Glaubitz J, Buckler E, Doebley J, Gaut B, Goodman M, Holland J, Kresovich S, McMullen M, Stein L, and Ware D. 2006. Panzea: a database and resource for moleuclar and functional diversity in the maize genome. Nucleic Acids Res 34:D752-757.

Zhu J, Chan S, Alvarez S, Asirvatham VS, Schachtman DP, Wu Y, and Sharp RE. 2006. Cell wall proteome in the maize primary root elongation zone. I. Extraction and identification of water-soluble and lightly ionically bound proteins. Plant Physiol. 140(1): 311-325.

2005

Auger DL, Gray AD, Ream TS, Kato A, Coe EH Jr., and Birchler JA. 2005. Nonadditivie gene expression in diploid and triploid hybrids of maize. Genetics 169(1):389-397.

Barb AS, Shyu CR, and Sethi YP. 2005. Knowledge Representation and Sharing Using Visual Semantic Modeling for Diagnostic Medical Image Databases. IEEE Transactions on Information Technology in BioMedicine. Vol. 9(4), 538-553.

Chege PG, Clark TL, and Hibbard BE. 2005. Alternate host phenology affects survivorship, growth and development of western corn rootworm (Coleoptera: Chrysomelidae) larvae.  Environ. Entomol. 34:1441-1447.

Chi PH, Scott G, and Shyu CR . 2005. A fast protein structure retrieval system using image-based distance matrices and multidimensional index. International Journal of Software Engineering and Knowledge Engineering, Special Issue on Software and Knowledge Engineering Support in Bioinformatics. 15:527-545.

Coe E, and Kass LB. 2005. Proof of physical exchange of genes on the chromosomes. Proc Natl Acad Sci. 102:6641-6646.

Coe EH, and Schaeffer ML. 2005. Genetic, physical, maps, and database resources for maize. Maydica 50:285-303.

Della Vedova CB, Lorbiecke R, Kirsch H, Schulte MB, Scheets K, Borchert LM, Scheffler BE, Wienand U, Cone KC, and Birchler JA. 2005. The dominant inhibitory chalcone synthase allele C2-Idf (inhibitor diffuse) from Zea mays (L.) acts via an endogenous RNA silencing mechanism. Genetics. 170:1989-2002.

Fang M, Kremer RJ, Motavalli P, and Davis G. 2005. Bacterial diversity in rhizospheres of nontransgenic and transgenic corn. Appl Environ Microbiol. 71:4132-4136.

Flint-Garcia SA, Thuillet AC, Yu J, Pressoir G, Romero SM, Mitchell SE, Doebley J, Kresovich S, Goodman MM, and Buckler ES. 2005.  Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J. 44:1054-1064.

Glover MA., Willmot DB, Darrah LL, Hibbard BE, and Zhu X.  2005.  Diallel analysis of agronomic traits using Chinese and U.S. maize germplasm.  Crop Sci. 45: 1096-1102.

Goodger JQ, Sharp RE , Marsh EL, and Schachtman DP. 2005. Relationships between xylem sap constituents and leaf conductance of well-watered and water-stressed maize across three xylem sap sampling techniques. J Exp Bot 56(419):2389-2400.

Hibbard B, Vaughn TT, Oyediran IO, Clark T, and Ellersieck MR. 2005. Effect of Cry3Bb1-expressing transgenic corn on plant-to-plant movement by western corn rootworm larvae (Coleoptera: Chrysomelidae). J Econ Entomol. 98:1126-1138.

Jaiswal P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M,, Stein L, Stevens P, Vincent L, Ware D, and Zapata F. 2005. Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages. Comparative and Functional Genomics. 6: 388-397.

Jiao S, Thornsberry J, Elthon TE, and Newton K. 2005. Biochemical and molecular characterization of photosystem I deficiency in the NCS6 mitochondrial mutant of maize. Plant Mol Biol. 57:303-313.

Jin W, Lamb JC, Vega JM, Dawe RK, Birchler JA, and Jiang J. 2005. Molecular and functional dissection of the maize B chromosome centromere. Plant Cell 17(5): 1412-1423.

Kass LB, Bonneuil C, and Coe EH Jr. 2005. Cornfests, cornfabs and cooperation: the origins and beginnings of the maize genetics cooperation news letter. Genetics 169(4):1787-1797.

Kato A, Zheng YZ, Auger DL, Phelps-Durr T, Bauer MJ, Lamb JC, and Birchler JA. 2005. Minichromosomes derived from the B chromosomes of maize. Cytogenet Genome Res 109(1):156-165.

Kuzmin EV, Duvic DN, and Newton KJ . 2005. A mitochondrial mutator system in maize. Plant Physiol 137(2):779-789.

Lamb JC, Kato A, and Birchler JA. 2005. Sequences associated with A chromosome centromeres are present throughout the maize B chromosome. Chromosoma 113(7): 337-349.

McGinnis K, Chandler V, Cone K, Kaeppler H, Kaeppler S, Kerschen A, Pikaard C, Richards E, Sidorenko L, Smith T, Springer N, and Wulan T. 2005. Transgene-induced RNA interference as a tool for plant functional genomics.
Methods Enzymol. 392:1-24.

Moeser J, and Hibbard BE.  2005. A synopsis of the nutritional ecology of larvae and adults of Diabrotica virgifera virgifera (LeConte) in the New and Old World - Nouvelle cuisine for the invasive maize pest Diabrotica virgifera virgifera in Europe?.  Western Corn Rootworm: Ecology and Management.  Stefan Vidal, Ulrich Kuhlmann, and Richard Edwards (eds.), CABI publishers, Wallingford, United Kingdom. pp. 41-65.

Oyediran IO, Hibbard BE, and Clark TL. 2005. Western corn rootworm (Coleoptera: Chrysomelidae) beetle emergence from weedy Cry3Bbl rootworm-resistant transgenic corn.
J Econ Entomol. 98(5):1679-84.

Poroyko V, Hejlek LG, Spollen WG, Springer GK, Nguyen HT, Sharp RE, and Bohnert HJ. 2005. The maize root transcriptome by serial analysis of gene expression. Plant Physiol. 138:1700-10.

Ream TS, Stroble J, Roller B, Auger DL, Kato A, Halbrook C, Peters EM, Theuri J, Bauer MJ, Addae P, Dioh W, Staub JM, Gilbertson LA, and Birchler JA. 2005. A test for ectopic exchange catalyzed by Cre recombinase in maize. Theor Appl Genet. 111:378-85.

Reneker J, and Shyu CR. 2005. Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals. BMC Bioinformatics. 6:111.

Szalma SJ, Buckler ES, Snook ME, and McMullen MD. 2005. Association analysis of candidate genes for maysin and chlorogenic acid accumulation in maize silks. Theor Appl Genet. 110(7): 1324-1333.

Tallamy DW, Hibbard BE, Clark TL, and Gillespie JJ.  2005.  Western Corn Rootworm, Cucurbits, and Cucurbitacins. Western Corn Rootworm: Ecology and Management.  Stefan Vidal, Ulrich Kuhlmann, and Richard Edwards (eds.), CABI publishers, Wallingford, United Kingdom. pp. 67-93.

Theuri J, Phelps-Durr T, Mathews S, and Birchler J. 2005. A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize. Cytogenet Genome Res 110(1):203-208.

Willmot, DB, Hibbard BE, Barry BD, Antonio AQ, and Darrah LL.  2005.  Registration of Mo48 and Mo49 maize germplasm lines with resistance to European corn borer.  Crop Sci. 45: 426-427.

Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, and Gaut BS. 2005. The effects of artificial selection on the maize genome. Science. 308:1310-1314.

Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, Doebley JF, Gaut BS, and McMullen MD. 2005. A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell 17(11): 2859-2872.

Yang DE, Jin DM, Wang B, Zhang DS, Nguyen HT , Zhang CL, and Chen SJ. 2005. Characterization and mapping of Rpi1, a gene that confers dominant resistance to stalk rot in maize. Mol Genet Genomics 274(3):229-234.

2004

Auger DL, Reams TS, and Birchler JA. 2004. A test for a metastable epigenetic component of heterosis using haploid induction in maize. Theor Appl Genet 108(6):1017-1023.

Birchler JA, and Newton KJ . 2004. Discovering the seeds of diversity in plant genomes. Genome Biol 5(5):323.

Carson C, Robertson J, and Coe E. 2004. High-volume mapping of maize mutants with simple sequence repeat markers. Plant Molecular Biology Reporter 22:131-143.

Clark TL, and Hibbard BE. 2004. Comparison of non-maize hosts to support western corn rootworm (Coleoptera: Chrysomelidae) larval biology.  Environ. Entomol. 33: 681-689.

Clifton SW, Minx P, Fauton CM, Gibson M, Allen JO, Sun H, Thompson M, Barbazuk WB, Kanugant S, Tayloe C, Meyer L, Wilson RK, and Newton KJ. 2004. Sequence and comparative analysis of the maize NB mitochondrial genome. Plant Physiol 136(3):3486-3503.

Della Vedova CB, and Cone KC. 2004. Paramutation: the chromatin connection. Plant Cell 16(6):1358-1364.

Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C, and Coe EH Jr. 2004. Anchoring 9,371 maize expressed sequence tagges unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Plant Physiol 134(4):1317-1326.

Hibbard BE, Higdon ML, Duran DP, Schweikert YM, and Ellersieck MR. Role of egg density on establishment and plant-to-plant movement by western corn rootworm larvae (Coleoptera: Chrysomelidae). J Econ Entomol. 97(3):871-82.

Kato A, Lamb JC, and Birchler JA. 2004. Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proc Natl Acad Sci USA 101(37):13554-13449.

Kuzmin EV, Karpova OV, Elthon TE, and Newton KJ. Mitochondrial respiratory deficiencies signal up-regulation of genes for heat shock proteins. J Biol Chem. 279(20):20672-7.

Lawrence CJ, Dong Q, Polacco ML, Seigfried TE, and Brendl V. 2004. MaizeGDB, the community database for maize genetics and genomics. Nucleic Acids Res 32:D393-397.

Martin SA, Darrah LL, and Hibbard BE. 2004. Divergent selection for rind penetrometer resistance and its effects on European corn borer damage and stalk traits in corn.  Crop Sci. 44: 711-717.

McMullen MD, Kross H, Snook ME, Cortes-Cruz M, Houchins KE, Musket TA, and Coe EH Jr. 2004. Salmon silk genes contribute to the elucidation of the flavone pathway in maize (Zea mays L.). J Hered 95(3): 225-233.

Oyediran IO, Hibbard BE, and Clark TL.  2004.  Prairie grasses as hosts of the western corn rootworm (Coleoptera: Chrysomelidae).  Environ. Entomol.  33: 740-747.

Oyediran IO, Hibbard BE, Clark TL, and French BW.  2004.  Selected grassy weeds as alternate hosts of the northern corn rootworm (Coleoptera: Chrysomelidae).  Environ. Entomol. 33: 1497-1504.

Penning BW, Johal GS, and McMullen MD. 2004. A major suppressor of cell death, slm1, modifies the expression of the maize (Zea mays L.) lesion mimic mutation les23. Genome. 47(5):961-969.

Phelps-Durr TL, and Birchler JA. 2004. An asymptotic determination of minimum centromere size for the maize B chromosome. Cytogenet Genome Res 106(2-4):309-313.

Reneker J, Shyu CR, Zeng P, Polacco JC, and Gassmann W. ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval. Nucleic Acids Res. 32.

Sharp RE, Poroyko V, Hejlek LG, Spollen WG, Springer GK, Bohnert HJ, and Nguyen HT. 2004. Root growth maintenance during water deficits: physiology to functional genomics. J Exp Bot 55(407):2343-2351.

Shyu CR, Chi PH, Scott G, and Xu D.
ProteinDBS: a real-time retrieval system for protein structure comparison. Nucleic Acids Res. 32.

Willmot DB, Hibbard BE, Darrah LL, Pollak LM, Montgomery K, Pratt RC, Abel CA, Hawk JA, Weldekidan T, and Foster JE. Effect of environment on resistance to the European corn borer (Lepidoptera: Crambidae) in maize. J Econ Entomol. 97(5):1745-51.

Wilson TA, and Hibbard BE. 2004.  Host suitability of nonmaize agroecosystem grasses for the western corn rootworm (Coleoptera: Chrysomelidae).  Environ. Entomol. 33: 1102-1108.

2003

Aisen AM, Broderick LS, Winer-Muram H, Brodley CE, Kak AC, Pavlopoulou C, Dy J, Shyu CR, and Marchiori A. 2003. Automated storage and retrieval of thin-section CT images to assist diagnosis: system description and preliminary assessment. Radiology. 228(1):265-70.

Barry BD, Antonio AQ, Darrah LL, Hibbard BE , Barry JM, Praiswater TW, Thiel CL, and Willmot DB. 2003.  Release of maize germplasm lines Mo48 and Mo49 with resistance to European corn borer.  United States Department of Agriculture Agricultural Research Service and Missouri Agricultural Experiment Station.

Birchler JA, Auger DL, and Riddle NC. 2003. In search of the molecular basis of heterosis. Plant Cell. 15(10):2236-9.

Birchler JA, Dawe RK, and Doebley JF. 2003. Marcus rhoades, preferential segregation and meiotic drive. Genetics. 164(3):835-41.

Chopra S, Cocciolone SM, Bushman S, Sangar V, McMullen MD, and Peterson T. 2003. The maize unstable factor for orange1 is a dominant epigenetic modifier of a tissue specifically silent allele of pericarp color1. Genetics. 163(3):1135-46.

Cortes-Cruz M, Snook M, and McMullen MD. 2003. The genetic basis of C-glycosyl flavone B-ring modification in maize (Zea mays L.) silks. Genome. 46(2):182-94.

Dias AP, Braun EL, McMullen MD, and Grotewold E. 2003. Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication. Plant Physiol. 131(2):610-20.

Fang Z, Cone K, Sanchez-Villeda H, Polacco M, McMullen M, Schroeder S, Gardiner J, Davis G, Havermann S, Yim Y, Vroh Bi I, and Coe E. 2003. iMap: a database-driven utility to integrate and access the genetic and physical maps of maize. Bioinformatics. 19(16):2105-11.

Fang Z, Polacco M, Chen S, Schroeder S, Hancock D, Sanchez H, and Coe E. 2003. cMap: the comparative genetic map viewer. Bioinformatics. 19(3):416-7.

Flint-Garcia SA, Darrah LL, McMullen MD, and Hibbard BE. 2003. Phenotypic versus marker-assisted selection for stalk strength and second-generation European corn borer resistance in maize. Theor Appl Genet. 107(7):1331-6.

Flint-Garcia SA, Jampatong C, Darrah LL, and McMullen MD. 2003. Quantitative trait locus analysis of stalk strength in four maize populations. Crop Sci. 43:13-22.

Flint-Garcia SA, McMullen MD, and Darrah LL. 2003. Genetic relationship of stalk strength and ear height in maize. Crop Sci. 43:23-31.

Flint-Garcia SA, Thornsberry JM, and Buckler ES 4th. 2003. Structure of linkage disequilibrium in plants. Annu Rev Plant Biol. 54:357-74.

Hazen SP, Hawley RM, Davis GL, Henrissat B, and Walton JD. 2003. Quantitative trait loci and comparative genomics of cereal cell wall composition. Plant Physiol. 132(1):263-71.

Hibbard BE, Duran DP, Ellersieck MR, and Ellsbury MM. 2003. Post-establishment movement of western corn rootworm larvae (Coleoptera: Chrysomelidae) in Central Missouri corn. J Econ Entomol. 96(3):599-608.

Ivezić, M., Tollefson JJ, Raspudić E, Hibbard BE, and Brkić I. 2003. Evaluation of Croation corn hybrids for tolerance to corn rootworm (Diabrotica virgifera virgifera LeConte) larval feeding. XXIst IWGO Conference and VIII Diabrotica Subgroup meeting at Venice, Italy, October 27 - November 3, 2001, pp.205-212 of the proceedings book.

Jiang J, Birchler JA, Parrott WA, and Dawe RK. 2003. A molecular view of plant centromeres. Trends Plant Sci. 8(12):570-5.

Kazic T, Coe E, Polacco M, Shyu CR. 2003. Whither biological database research? OMICS. 7(1):61-5.

McMullen MD. 2003. Quantitative trait locus analysis as a gene discovery tool. Methods Mol Biol. 236:141-54.

Ober ES, and Sharp RE. 2003. Electrophysiological responses of maize roots to low water potentials: relationship to growth and ABA accumulation. J Exp Bot. 54(383):813-24.

Sanchez-Villeda H, Schroeder S, Polacco M, McMullen M, Havermann S, Davis G, Vroh-Bi I, Cone K, Sharopova N, Yim Y, Schultz L, Duru N, Musket T, Houchins K, Fang Z, Gardiner J, and Coe E. 2003. Development of an integrated laboratory information management system for the maize mapping project. Bioinformatics. 19(16):2022-30.

Springer NM, Napoli CA, Selinger DA, Pandey R, Cone KC, Chandler VL, Kaeppler HF, Kaeppler SM. 2003. Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiol. 132(2):907-25.

Vincent PL, Coe EH, and Polacco ML. 2003. Zea mays ontology--a database of international terms. Trends Plant Sci. 8(11):517-20.

2002

Auger DL, and Birchler JA. 2002. Maize tertiary trisomic stocks derived from B-A translocations. J Hered. 93(1):42-7.

Coe E, Cone K, McMullen M, Chen SS, Davis G, Gardiner J, Liscum E, Polacco M, Paterson A, Sanchez-Villeda H, Soderlund C, and Wing R. 2002. Access to the maize genome: an integrated physical and genetic map. Plant Physiol. 128(1):9-12.

Cone KC, McMullen MD, Bi IV, Davis GL, Yim YS, Gardiner JM, Polacco ML, Sanchez-Villeda H, Fang Z, Schroeder SG, Havermann SA, Bowers JE, Paterson AH, Soderlund CA, Engler FW, Wing RA, and Coe EH Jr. 2002. Genetic, physical, and informatics resources for maize. On the road to an integrated map. Plant Physiol. 130(4):1598-605.

Frame BR, Shou H, Chikwamba RK, Zhang Z, Xiang C, Fonger TM, Pegg SE, Li B, Nettleton DS, Pei D, and Wang K. 2002. Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system. Plant Physiol. 129(1):13-22.

Hibbard BE, Levine E, Duran DP, Gruenhagen NM, and Spencer JL. 2002. Electroantennogram response of -two western corn rootworm (Coleoptera: Chrysomelidae) adult populations to corn and soybean volatiles. J. Entomol. Sci. 37: 69-76.

Kaszas E, Kato A, and Birchler JA. 2002. Cytological and molecular analysis of centromere misdivision in maize. Genome. 45(4):759-68.

Kuzmin EV, Karpova OV, Elthon TE, and Newton KJ . 2004. Differential expression of alternative oxidatse genes in maize mitochondrial mutants. Plant Cell 14(12):3271-3284.

Polacco M, Coe E, Fang Z, Hancock D, Sanchez-Villeda H, and Schroeder S. 2002. MaizeDB-a functional genomics perspective. Comp Funct Genom. 3:128-131.

Sharopova N, McMullen MD, Schultz L, Schroeder S, Sanchez-Villeda H, Gardiner J, Bergstrom D, Houchins K, Melia-Hancock S, Musket T, Duru N, Polacco M, Edwards K, Ruff T, Register JC, Brouwer C, Thompson R, Velasco R, Chin E, Lee M, Woodman-Clikeman W, Long MJ, Liscum E, Cone K, Davis G, and Coe EH Jr. 2002. Development and mapping of SSR markers for maize. Plant Mol Biol. 48(5-6):463-81.

Sharp RE, and LeNoble ME. 2002. ABA, ethylene and the control of shoot and root growth under water stress. J Exp Bot. 53(366):33-7.

Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L, Kresovich S, Matsuoka Y, and Doebley J. 2002. Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc Natl Acad Sci. 99(15):9650-5.

Yim YS, Davis GL, Duru NA, Musket TA, Linton EW, Messing JW, McMullen MD, Soderlund CA, Polacco ML, Gardiner JM, and Coe EH Jr. 2002. Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization. Plant Physiol. 130(4):1686-96.

Zhong CX, Marshall JB, Topp C, Mroczek R, Kato A, Nagaki K, Birchler JA, Jiang J, and Dawe RK. 2002. Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. Plant Cell. 14(11):2825-36.

2001

Auger DL, Newton KJ, and Birchler JA. 2001. Nuclear gene dosage effects upon the expression of maize mitochondrial genes. Genetics. 157(4):1711-21.

Birchler JA, Bhadra U, Bhadra MP, and Auger DL. 2001. Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits. Dev Biol. 234(2):275-88.

Cocciolone SM, Chopra S, Flint-Garcia SA, McMullen MD, and Peterson T. 2001. Tissue-specific patterns of a maize Myb transcription factor are epigenetically regulated. Plant J. 27(5):467-78.

Coe EH Jr. 2001. The origins of maize genetics. Nat Rev Genet. 2(11):898-905.

Coe EH, Polacco ML, Davis G, and McMullen MD. 2001. Maize molecular maps: markers, bins, and database. Pp. 255-284 in Phillips RL, Vasil IK, eds. DNA-Based Markers in Plants, 2d ed. Kluwer Academic Pub., Dordrecht, Netherlands.

Cooper JL, and Birchler JA. 2001. Developmental impact on trans-acting dosage effects in maize aneuploids. Genesis. 31(2):64-71.

Krishnan HB, and Coe E Jr. 2001. Seed storage proteins. Pp. 1782-1787 in Brenner S, Miller JH, eds., Encyclopedia of Genetics. Academic Press, San Diego.

McMullen MD, Snook M, Lee EA, Byrne PF, Kross H, Musket TA, Houchins K, and Coe EH Jr. 2001. The biological basis of epistasis between quantitative trait loci for flavone and 3-deoxyanthocyanin synthesis in maize (Zea mays L.). Genome. 44(4):667-76.

Oliver M. 2001. Abiotic Stress in Plants. Physiol Plant. 112(2):151.

Page BT, Wanous MK, and Birchler JA. 2001. Characterization of a maize chromosome 4 centromeric sequence: evidence for an evolutionary relationship with the B chromosome centromere. Genetics. 159(1):291-302.

Abel CA, Berhow MA, Wilson RL, Binder BF, and Hibbard BE. 2000. Evaluation of conventional resistance to European corn borer (Lepidoptera: Crambidae) and western corn rootworm (Coleoptera: Chrysomelidae) in experimental maize lines developed from a backcross breeding program. J Econ Entomol. 93(6):1814-21.